Deep embedded clustering generalisability and adaptation for mixed datatypes: two critical care cohorts

Author:

de Kok Jip1,Rosmalen Frank van1,Koeze Jacqueline2,Keus Frederik2,Kuijk Sander van1,Forte José Castela2,Schnabel Ronny1,Driessen Rob1,Herpt Thijs van1,Sels Jan-Willem1,Bergmans Dennis1,Lexis Chris1,Doorn William van1,Meex Steven1,Xu Minnan3,Borrat Xavier4,Cavill Rachel5,Horst Iwan van der1,Bussel Bas van1

Affiliation:

1. Maastricht University Medical Centre+

2. University Medical Centre Groningen

3. Takeda Pharmaceuticals

4. Hospital Clinic de Barcelona

5. Maastricht University

Abstract

Abstract We propose X-DEC, a novel deep clustering technique that can integrate mixed datatypes (in this study numerical and categorical variables). Deep Embedded Clustering (DEC) is a promising technique capable of managing extensive sets of variables and non-linear relationships. Nevertheless, DEC cannot adequately handle mixed datatypes. Therefore, we created X-DEC by replacing the autoencoder with an X-shaped variational autoencoder (XVAE) and optimising hyperparameters for cluster stability. We compared DEC and X-DEC by reproducing a previous study that used DEC to identify clusters in a population of intensive care patients. We assessed internal validity based on cluster stability on the development dataset. Since generalisability of clustering models has insufficiently been validated on external populations, we assessed external validity by investigating cluster generalisability onto an external validation dataset. We concluded that both DEC and X-DEC resulted in clinically recognisable and generalisable clusters, but X-DEC produced much more stable clusters.

Publisher

Research Square Platform LLC

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