In silico analysis reveals inhibitory potential of phytocompounds Taraxerol (Coccinia indica) and Epoxywithanolide-1(Withania coagulans) on α-Amylase : A possible way to control postprandial hyperglycemia-induced endothelial dysfunction and cardiovascular events

Abstract

Postprandial hyperglycemia (PPG) exacerbates endothelial dysfunction and impairs vascular function in diabetes as well in healthy people. Though there are drugs available to regulate PPG, synthetic drugs' severe gastrointestinal side effects warranted the search for alternative treatments. Recently, some phytochemicals captured the attention because of their inhibitory effects on α-amylase to control diabetes. The aim of this study was to investigate and identify potential alpha-amylase inhibitors in C. indica and W. coagulans. This study also aims to understand one of the possible mechanisms of action of plants for their anti-diabetic activity. A total of 36 phytochemical ligands were subjected for protein-ligand docking analysis. Among the phytochemicals, Taraxerol and Epoxywithanolide-I demonstrated significant binding free energy of -10.2 Kcal/mol and − 11.9 Kcal/mol respectively, which was higher than the reference acarbose with − 8.6 Kcal/mol. These molecules were subjected for Molecular Dynamics Simulation (MDS) analysis with alpha-amylase protein for a duration of 150 ns. Among the three complexes, Taraxerol and Epoxywithanolide-I complexes demonstrates strong potential as inhibitors of the target protein. MDS results were analyzed via Root Mean Square Deviation (RMSD), Fluctuation of Residues, Potential Energy, Radii of Gyration and Solvent Access Surface Area analysis. Taraxerol demonstrated a significantly low potential energy of -1924605.25 Kj/mol, and Epoxywithanolide-I demonstrated − 1964113.3 Kj/mol of potential energy. RMSD plot shows that Epoxywithanolide-I has much higher stability than the other MDS complexes. Drugability and toxicity studies show that the test ligands are demonstrating strong potential as drug like molecules. The results of the study conclude that, Taraxerol of C. indica and Epoxywithanolide-I of W. coagulans are strong inhibitors of alpha-amylase enzyme and that, this is one of the possible mechanisms of action of the plants for their reported anti-diabetic activities. Further in-vitro analysis is in demand to prove the observed results.