Theoretical study of the competition between folding and contact interactions on the properties of polymers using self-avoid random walk algorithm

Abstract

Abstract The self-avoid random walk algorithm has been extensively used in the study of polymers. In this work we study the basic properties of the trajectories generated with this algorithm when two interactions are added to it: contact and folding interaction. These interactions represent the internal forces of the polymer as well as the effect of the solvent. When independently added to the algorithm, the contact interaction creates the compact phase while the folding one creates the extended phase. These are the consequences of the typical event of each interaction. On the other hand, when this typical event is avoided there is no established phase on the system. When simultaneously added, there is a competition between the interactions and the folding one is dominant over the contact one. The resulting phase is always the extended one with and without the contact interaction.