Genome sequence of the Mediterranean red coral Corallium rubrum

Author:

Ganot Philippe1,Rausch Tobias2,Fritz Markus2,Zoccola Didier3,Wang Xin4,Aranda Manuel4,Benes Vladimir2,Allemand Denis1,Tambutté Sylvie1

Affiliation:

1. Research Unit on the Biology of Precious Corals CSM—CHANEL

2. EMBL, Genomics Core Facility

3. CSM, Department of Marine Biology, Centre Scientifique de Monaco

4. KAUST, King Abdullah University of Science and Technology

Abstract

Abstract

Objectives: Corallium rubrum, the precious red coral, is an octocoral endemic to the western Mediterranean Sea. Like most octocorals, it produces tiny, calcified structures called sclerites. Uniquely, it also produces a completely calcified axial skeleton that is a bright red color. This combination of color and hardness has made the red coral prized for centuries, leading to extensive fishing and trade for use in jewelry. Understanding how it produces this red skeleton is thus a central question in economics, culture, and biology. To gain insights into this process, we sequenced the C. rubrum genome.Data description: Our C. rubrum genome assembly is 655 megabases (Mb) in size, distributed across 2,910 scaffolds with a very low level of unknown nucleotides (0.95%). We used a pipeline based on the MaSuRCA hybrid assembler, combining long PacBio reads and short Illumina reads, followed by several steps to improve the assembly, including scaffolding, merging, and polishing. This represents the third published genome of an octocoral and the first within the order Scleralcyonacea.

Publisher

Research Square Platform LLC

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