1. Abadi M, Agarwal A, Barham P, Brevdo E, Chen Z, Citro C, Corrado GS, Davis A, Dean J, Devin M, Ghemawat S, Goodfellow I, Harp A, Irving G, Isard M, Jozefowicz R, Jia Y, Kaiser L, Kudlur M, Levenberg J, Mané D, Schuster M. & others (2015) TensorFlow: Large-scale machine learning on heterogeneous systems. Software available from tensorflow.org.
2. Nextclade: clade assignment, mutation calling and quality control for viral genomes;Aksamentov I;J Open Source Softw,2021
3. Mechanisms and consequences of positive-strand RNA virus recombination;Bentley K;J Gen Virol,2018
4. Fitness effects of mutations to SARS-CoV-2 proteins;Bloom JD;Virus Evol,2023
5. Burel E, Colson P, Lagier J-C, Levasseur A, Bedotto M, Lavrard-Meyer P, Fournier P-E, La Scola B, Raoult D. (2022). Sequential Appearance and Isolation of a SARS-CoV-2 Recombinant between Two Major SARS-CoV-2 Variants in a Chronically Infected Immunocompromised Patient. Viruses, 14(6), 1266. https://www.mdpi.com/1999-4915/14/6/1266.