Rare variants in 45 genes account for 25% of cases with NDDs in 415 pediatric patients

Author:

Aspromonte Maria Cristina1,Conte Alessio Del1,Polli Roberta2,Baldo Demetrio3,Benedicenti Francesco4,Bettella Elisa2,Bigoni Stefania5,Boni Stefania6,Ciaccio Claudia7,D’Arrigo Stefano7,Donati Ilaria8,Granocchio Elisa7,Mammi Isabella9,Milani Donatella10,Negrin Susanna11,Nosadini Margherita12,Soli Fiorenza13,Stanzial Franco4,Turolla Licia3,Tosatto Silvio C.E.1,Murgia Alessandra2,Leonardi Emanuela1

Affiliation:

1. Department of Biomedical Sciences, University of Padova, Padova

2. Molecular Genetics of Neurodevelopment, Department of Woman and Child Health, University of Padova, Padova

3. Medical Genetics Unit, Treviso Hospital, Treviso

4. Genetic Counseling Service, Regional Hospital of Bolzano, Bolzano

5. Medical Genetics Unit, Ferrara University Hospital, Ferrara

6. Medical Genetics Unit, S. Martino Hospital, Belluno

7. Department of Pediatric Neurosciences, Fondazione IRCCS Istituto Neurologico “Carlo Besta”, Milan

8. Unit of Medical Genetics, AUSL Romagna, Cesena

9. Medical Genetics Unit, Mirano Hospital, Venezia

10. Fondazione IRCCS, Ca' Granda Ospedale Maggiore Policlinico, Milan

11. Epilepsy and Clinical Neurophysiology Unit, Scientific Institute, IRCCS E. Medea, Treviso

12. Paediatric Neurology and Neurophysiology Unit, Department of Women’s and Children’s Health, University Hospital of Padova, Padova

13. Genetic Unit, UOM Patologia Clinica, S. Chiara Hospital of Trento, Trento

Abstract

Abstract Neurodevelopmental disorders (NDDs) are common conditions including clinically diverse and genetically heterogeneous diseases, such as intellectual disability, autism spectrum disorders, and epilepsy. Understanding the genetic causes of NDDs is challenging due to their complex and heterogeneous nature. In this study, a targeted gene panel sequencing has been used to investigate the genetic causes of NDDs in a cohort of 415 pediatric patients. We identified 60 pathogenic and 49 potentially pathogenic variants in 102 individuals that accounted for 25% of NDD cases in the cohort. The majority of causative variants were de novo, with some inherited from mildly affected parents. Loss-of-function variants were the most common type of causative mutation. In silico analysis tools were used to assess the potential impact of variants on splicing and structural/functional effects of missense variants. The study highlights the challenges in variant interpretation and predicting associated phenotypes. The clinical features observed in some patients were atypical for the mutations found in their genes. Overall, this study provides valuable insights into the genetic causes of NDDs and emphasizes the importance of understanding the underlying genetic factors for accurate diagnosis, prognosis, and intervention development in neurodevelopmental conditions.

Publisher

Research Square Platform LLC

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