RNA- Seq analysis of Taverniera cuneifolia (Roth) Ali.

Abstract

Abstract Aims: To unravel the potential of Taverniera cuneifoliain transcriptomics Methods: RNA Seq experiment was conducted using NGS to understand the key metabolites and genes from Taverniera cuneifolia(Roth) Ali. Key results: 7.29 Gb of raw data and generated 5,59,91,233 raw reads. The high-quality reads were de novo assembled by Trinity assembler followed through CD-HIT resulted into 35,590 Unigene with an average of 419 bp. The unigenes analyzed using BLAST2GO resulted in 27884 (78.35%) transcripts with blast hits, 22510 (63.25%) transcripts with mapping and 21066 (59.19%) transcripts with annotation. Functional annotation was carried out using NCBI non-redundant and Uniprot databases resulted in the identification of 21066 (59.19%) annotated transcripts and GO assigned to 24751 (69.54%) transcripts. The gene ontology result shows maximum sequences match with Biological Processes (48%) Molecular Function (27%) and Cellular components (23%). A total of 179 metabolic enriched pathways were identified which included pathways like Sesquiterpenoid and triterpenoid pathway which were involved in synthesis of important secondary metabolite Glycyrrhizin biosynthesis. Transcription factors were predicted by comparison with Plant Transcription Factor Database and 1557 transcripts belonging to 85 transcription factor families were identified. Conclusions: This transcriptome analysis provided an important resource for future genomic studies in Taverniera cuneifolia., besides identifying functional secondary metabolites genes of Taverniera cuneifolia with Pharmacological potential for future functional genomics and metabolomic engineering of secondary metabolites form these plants towards diversified industrial applications. Implications: The study confirms that presence of glycyrrhizin producing genes with six key genes that are backbone of sesquiterpenoid biosynthesis pathway in Taverniera cuneifolia. Significance Licorice (Glycyrrhiza glabra roots) is used as traditional Chinese herbal medicines in majority of formulations. Licorice is also used in Industries like food, herbal and cosmetics etc. due to its high demand in the market it is imported from foreign countries and is not available locally of superior quality (Y. Liu et al., 2015). In India, Taverniera cuneifolia has been described as a potent substitute of Licorice, it has been quoted in ancient books like Charak Samhita during the Nigandu period (Pal & Shukla, 2003) and Barda dungar ni Vanaspati ane upyog (Indraji, 1910). It has been used as an expectorant, anti-inflammatory, anti-ulcer, wound healing, blood purifier etc. Transcriptomic studies will assist in understanding the basic molecular structure, function and organization of information within the genome of Taverniera cuniefolia. This study will help us to identify the key metabolites their expressions and genes responsible for their production.