Integrating genome-wide association and expression quantitative trait loci (eQTL) analyses identifies genes affecting fertility in cattle and suggests a common set of genes regulating fertility in mammals

Author:

Forutan Mehrnush1ORCID,Engle Bailey1,Chamberlain Amanda2ORCID,Ross Elizabeth3,Nguyen Loan3,D’Occhio Michael,Snr Alf Collins,Kho Elise,Fordyce Geoffry,Speight Shannon,Goddard Michael4,Hayes Ben1ORCID

Affiliation:

1. University of Queensland

2. Agribio

3. The university of Queensland

4. University of Melbourne

Abstract

Abstract Most genetic variants associated with fertility in mammals fall in non-coding regions of the genome and it is unclear how these variants affect fertility. Here we used genome-wide association (GWAS) summary statistics for heifer puberty (pubertal or not at 600 days) from 27,707 cattle; multi-trait GWAS signals from 2,119 cattle for four fertility traits, including days to calving, age at first calving, heifer pregnancy status, and foetus age in weeks; and expression quantitative trait locus (eQTL) for whole blood from 489 cattle, to identify 87 putatively functional genes affecting cattle fertility. Our analysis revealed a significant overlap between the set of cattle and human fertility-related genes. This finding implies the existence of a shared pool of genes that regulate fertility in mammals. These findings have important implications for the development of novel approaches to improve fertility in cattle and potentially in other mammals as well.

Publisher

Research Square Platform LLC

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