57 InDel markers for spotted longbarbel catfish, Hemibagrus guttatus developed by whole genome resequencing

Author:

Wu Yuli1,Jiang Zhiyong1,He Zhichao1,Jiang Wanying1

Affiliation:

1. Agro-Tech Extension Center of Guangdong Province

Abstract

Abstract

Spotted longbarbel catfish, Hemibagrus guttatus (Lacepède, 1803), is benthic freshwater fish, mainly distributed in southern China, Laos, Thai, and Viet Nam. The wild population of H. guttatus is continuously decreasing, making it essential to protect this valuable fish resources. Understanding the genetic diversity and population structure of H. guttatus is critical to its protection. In the study, we therefore developed 57 InDel markers for H. guttatus by whole genome resequencing. The observed heterozygosity and expected heterozygosity ranged from 0.3333 to 0.5833 and 0.2778 to 0.5000, respectively. The value of polymorphism information content was between 0.2692 and 0.3750. One locus significantly deviated from the Hardy-Weinberg equilibrium (p<0.05). These InDel markers are of great value for genetic diversity and conservation of H. guttatus.

Publisher

Springer Science and Business Media LLC

Reference10 articles.

1. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32(3): 314–331

2. Chu XL, Zheng BS, Dai DY (1999) Fauna Sinica, Class Teleostei, Siluriformes (in Chinese). Scientific Press, Beijing.

3. DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, Del Angel G, Rivas MA, Hanna M, McKenna A (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43(5): 491–498

4. Ha NTH, Van Thang B, Vinh TV, Van TT (2017) Genetic diversity of Hemibagrus guttatus in Thai Nguyen Province by RAPD markers. Journal of forestry science and technology 5:11–17

5. Hechanova SL, Bhattarai K, Simon EV, Clave G, Karunarathne P, Ahn EK, Li CP, Lee JS, Kohli A, Hamilton NR, Hernandez JE (2021) Development of a genome-wide InDel marker set for allele discrimination between rice (Oryza sativa) and the other seven AA-genome Oryza species. Scientific reports 11(1):8962

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3