A Novel Metagenomic Binning Framework Using NLP Techniques in Feature Extraction
Author:
Affiliation:
1. Faculty of Computer Science and Engineering, Ho Chi Minh University of Technology, VNU-HCM
2. HCMC University of Technology and Education
Publisher
Information Processing Society of Japan
Subject
Computer Science Applications,Biochemistry, Genetics and Molecular Biology (miscellaneous)
Link
https://www.jstage.jst.go.jp/article/ipsjtbio/15/0/15_1/_pdf
Reference32 articles.
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2. [2] Vinh, L., Lang, T., Binh, L. and Hoai, T.: A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads, Algorithms Mol. Biol., Vol.10, No.2 (2015).
3. [3] Blei, D., Ng, A. and Jordan, M.: Latent dirichlet allocation, Journal of Machine Learning Research, Vol.3, pp.993-1022 (2003).
4. [4] Lee, D.D. and Seung, H.S.: Learning the parts of objects by non-negative matrix factorization, Nature, Vol.401, No.6755, pp.788-791 (1999).
5. [5] Deerwester, S., Dumais, S., Landauer, T., Furnas, G. and Harshman, R.: Indexing by latent semantic analysis, J. Am. Soc. Inf. Sci., Vol.41, pp.391-407 (1990).
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