Visualised genotyping assay with oral swabs in a closed tube by nested invasive reaction assisted with gold nanoparticle probes

Author:

Li Yijun1ORCID,Wei Wei1,Ma Yi2,Shan Jingwen1,Chu Yanan1,Zhang LiKun2,Liu Danni3,Ma Xueping1,Zhou Guohua1234ORCID,Wu Haiping13ORCID

Affiliation:

1. Department of Clinical Pharmacy Jinling Hospital School of Pharmaceutical Sciences Southern Medical University Guangzhou China

2. State Key Laboratory of Analytical Chemistry for Life Science and Jiangsu Key Laboratory of Molecular Medicine Medical School of Nanjing University Nanjing China

3. School of Life Science and Technology China Pharmaceutical University Nanjing China

4. School of Pharmacy Nanjing Medical University Nanjing China

Abstract

AbstractSingle nucleotide polymorphism (SNP) typing is crucial for drug dosage and disease progression. Therefore, a simple and convenient genotyping assay is essential for personalised medicine. Herein, we developed a non‐invasive, closed‐tube, and visualised method for genotyping. In this method, oral swabs were lysed to directly perform PCR coupled with nested invasive reaction and visualisation based on gold nanoparticle probes in a closed tube. The strategy for genotyping assay depends on the single base recognition property of invasive reaction. This assay allowed quick and simple sample preparation and the detection of 25 copies/μL of CYP2C19*2 and 100 copies/μL of CYP2C19*3 within 90 min. Further, 20 oral swab samples for CYP2C19*2 and CYP2C19*3 were correctly typed, which agreed with pyrosequencing, indicating that this method has great potential for SNP typing in source‐limited regions to guide personalised medicine.

Funder

National Natural Science Foundation of China

Publisher

Institution of Engineering and Technology (IET)

Subject

Electrical and Electronic Engineering,Biotechnology,Electronic, Optical and Magnetic Materials

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