CDX2 inducible microRNAs sustain colon cancer by targeting multiple DNA damage response pathway factors

Author:

Priya Swati1ORCID,Kaur Ekjot1ORCID,Kulshrestha Swati1ORCID,Pandit Awadhesh1ORCID,Gross Isabelle2ORCID,Kumar Nitin1ORCID,Agarwal Himanshi1ORCID,Khan Aamir1ORCID,Shyam Radhey1,Bhagat Prakash3,Prabhu Jyothi S.4ORCID,Nagarajan Perumal1ORCID,Deo S. V. S.3ORCID,Bajaj Avinash5ORCID,Freund Jean-Noël2ORCID,Mukhopadhyay Arnab1ORCID,Sengupta Sagar1ORCID

Affiliation:

1. Signal Transduction Laboratory, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India

2. Université de Strasbourg, Inserm, IRFAC UMR_S1113, FMTS, 67200 Strasbourg, France

3. Department of Surgical Oncology, All India Institute of Medical Sciences, New Delhi 110029, India

4. Division of Molecular Medicine, St. John's Research Institute, Bengaluru, Karnataka 560034, India

5. Laboratory of Nanotechnology and Chemical Biology, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana 121001, India

Abstract

ABSTRACT Meta-analysis of transcripts in colon adenocarcinoma patient tissues led to the identification of a DNA damage responsive miR signature called DNA damage sensitive miRs (DDSMs). DDSMs were experimentally validated in the cancerous colon tissues obtained from an independent cohort of colon cancer patients and in multiple cellular systems with high levels of endogenous DNA damage. All the tested DDSMs were transcriptionally upregulated by a common intestine-specific transcription factor, CDX2. Reciprocally, DDSMs were repressed via the recruitment of HDAC1/2-containing complexes onto the CDX2 promoter. These miRs downregulated multiple key targets in the DNA damage response (DDR) pathway, namely BRCA1, ATM, Chk1 (also known as CHEK1) and RNF8. CDX2 directly regulated the DDSMs, which led to increased tumor volume and metastasis in multiple preclinical models. In colon cancer patient tissues, the DDSMs negatively correlated with BRCA1 levels, were associated with decreased probability of survival and thereby could be used as a prognostic biomarker. This article has an associated First Person interview with the first author of the paper.

Funder

National Institute of Immunology

Department of Biotechnology, Ministry of Science and Technology

Council of Scientific and Industrial Research

Science and Engineering Research Board

J.C. Bose Fellowship

Ramalingaswami Reentry Fellowship

National Bioscience Award for Career Development

Indian Council of Medical Research

Publisher

The Company of Biologists

Subject

Cell Biology

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