Recovering hierarchies in terms of content similarity

Author:

Benatti AlexandreORCID,F Costa Luciano daORCID

Abstract

Abstract Several real-world and abstract structures and systems are characterized by marked hierarchy to the point of being expressed as trees. Since the study of these entities often involves sampling (or discovering) the tree nodes in a specific order that may not correspond to the original shape of the tree, reconstruction errors can be obtained. The present work addresses this important problem based on two main resources: (i) the adoption of a simple model of trees, involving a single parameter; and (ii) the use of the coincidence similarity as the means to quantify the errors by comparing the original and reconstructed structures considering the effects of hierarchical structure, nodes content, and uncertainty. Several interesting results are described and discussed, including that the accuracy of hierarchical reconstructions is highly dependent on the values of the uncertainty parameter as well as on the types of trees and that changes in the value of the content parameter can affect the accuracy of reconstructing hierarchies.

Funder

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Fundação de Amparo à Pesquisa do Estado de São Paulo

Conselho Nacional de Desenvolvimento Científico e Tecnológico

Publisher

IOP Publishing

Subject

General Physics and Astronomy,Mathematical Physics,Modeling and Simulation,Statistics and Probability,Statistical and Nonlinear Physics

Reference45 articles.

1. Network structure from rich but noisy data;Newman;Nat. Phys.,2018

2. Revealing strengths and weaknesses of methods for gene network inference;Marbach;Proc. Natl Acad. Sci.,2010

3. Minimal spanning tree: a new approach for studying order and disorder;Dussert;Phys. Rev. B,1986

4. Similarity evaluation on tree-structured data;Yang,2005

5. Classification of large graphs by a local tree decomposition;Emmert-Streib,2005

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3