Provision of an integrated data analysis platform for computational neuroscience experiments

Author:

Munir Kamran,Liaquat Kiani Saad,Hasham Khawar,McClatchey Richard,Branson Andrew,Shamdasani Jetendr

Abstract

Purpose – The purpose of this paper is to provide an integrated analysis base to facilitate computational neuroscience experiments, following a user-led approach to provide access to the integrated neuroscience data and to enable the analyses demanded by the biomedical research community. Design/methodology/approach – The design and development of the N4U analysis base and related information services addresses the existing research and practical challenges by offering an integrated medical data analysis environment with the necessary building blocks for neuroscientists to optimally exploit neuroscience workflows, large image data sets and algorithms to conduct analyses. Findings – The provision of an integrated e-science environment of computational neuroimaging can enhance the prospects, speed and utility of the data analysis process for neurodegenerative diseases. Originality/value – The N4U analysis base enables conducting biomedical data analyses by indexing and interlinking the neuroimaging and clinical study data sets stored on the grid infrastructure, algorithms and scientific workflow definitions along with their associated provenance information.

Publisher

Emerald

Subject

General Computer Science,Information Systems

Reference17 articles.

1. Burak, I.O. , Keator, D. , Wei, D. , Fennema-Notestine, C. , Pease, K. , Bockholt, J. and Grethe, J. (2010), “Federated web-accessible clinical data management within an extensible neuroimaging database”, Neuroinform, Neuroinformatics, Vol. 8 No. 4, pp. 231-249, Humana Press Inc., doi: 10.1007/s12021-010-9078-6, PMID: 20567938.

2. Dinov, I.D. , Van Horn, J.D. , Lozev, K.M. , Magsipoc, R. , Petrosyan, P. , Liu, Z. , Mackenzie-Graham, A. , Eggert, P. , Parker, D.S. and Toga, A.W. (2009), “Efficient, distributed and interactive neuroimaging data analysis using the LONI pipeline”, Journal of Frontiers in Neuroinformatics, Vol. 3 No. 22.

3. Frisoni, G.B. , Manset, D. , McClatchey, R. , Barkhof, F. , Cover, K.S. , Wahlund, L.O. , Finocchiaro, C. , Mangin, J.F. , Giannakopulos, P. , Toga, A. , Evans, A. and Montagnat, J. (2012), “N4U: expansion of neuGRID services and outreach to new user communities (poster)”, The 9th e-Infrastructure Concertation Meeting of the European Grid Infrastructure, 22 September, Lyon, available at: https://neugrid4you.eu/conferences (accessed 15 October 2012).

4. Grethe, J.S. , Baru, C. , Gupta, A. , James, M. , Ludaescher, B. , Martone, M.E. , Papadopoulos, P.M. , Peltier, S.T. , Rajasekar, A. , Santini, S. , Zaslavsky, I.N. and Ellisman, M.H. (2005), “BIRN: biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease”, Studies in Health Technology and Informatics, Vol. 112, pp. 100-109.

5. Hasson, U. , Skipper, J.I. , Wilde, M.J. , Nusbaum, H.C. and Small, S.L. (2008), “Improving the analysis, storage and sharing of neuroimaging data using relational databases and distributed computing”, NeuroImage, Vol. 39 No. 2, pp. 693-706.

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