Cross talk between Paneth and tuft cells drives dysbiosis and inflammation in the gut mucosa

Author:

Coutry Nathalie1ORCID,Nguyen Julie1ORCID,Soualhi Salima1ORCID,Gerbe François1,Meslier Victoria2ORCID,Dardalhon Valérie3,Almeida Mathieu2,Quinquis Benoit2ORCID,Thirion Florence2,Herbert Fabien1ORCID,Gasmi Imène1,Lamrani Ali1ORCID,Giordano Alicia1,Cesses Pierre1,Garnier Laure1ORCID,Thirard Steeve1,Greuet Denis1,Cazevieille Chantal4,Bernex Florence5ORCID,Bressuire Christelle26ORCID,Winton Douglas7,Matsumoto Ichiro8,Blottière Hervé M.29,Taylor Naomi310,Jay Philippe1ORCID

Affiliation:

1. Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France

2. Paris-Saclay University, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France

3. Institut de Génétique Moléculaire de Montpellier, University of Montpellier, CNRS, 34000 Montpellier, France

4. Institut des Neurosciences de Montpellier, University of Montpellier, 34000 Montpellier, France

5. Réseau d’Histologie Expérimentale de Montpellier, University of Montpellier, BioCampus, CNRS, INSERM, 34000 Montpellier, France

6. Paris-Saclay University, INRAE, AgroParisTech, Micalis Institute 78350, Jouy-en-Josas, France

7. Cancer Research-UK Cambridge Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, United Kingdom

8. Monell Chemical Senses Center, Philadelphia, PA 19104

9. Nantes Université, INRAE, UR1280, PhAN, F-44000, Nantes, France

10. Pediatric Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20814

Abstract

Gut microbiota imbalance (dysbiosis) is increasingly associated with pathological conditions, both within and outside the gastrointestinal tract. Intestinal Paneth cells are considered to be guardians of the gut microbiota, but the events linking Paneth cell dysfunction with dysbiosis remain unclear. We report a three-step mechanism for dysbiosis initiation. Initial alterations in Paneth cells, as frequently observed in obese and inflammatorybowel diseases patients, cause a mild remodeling of microbiota, with amplification of succinate-producing species. SucnR1-dependent activation of epithelial tuft cells triggers a type 2 immune response that, in turn, aggravates the Paneth cell defaults, promoting dysbiosis and chronic inflammation. We thus reveal a function of tuft cells in promoting dysbiosis following Paneth cell deficiency and an unappreciated essential role of Paneth cells in maintaining a balanced microbiota to prevent inappropriate activation of tuft cells and deleterious dysbiosis. This succinate–tuft cell inflammation circuit may also contribute to the chronic dysbiosis observed in patients.

Funder

Agence Nationale de la Recherche

Institut National Du Cancer

SIRIC

Ligue Nationale contre le Cancer

Inserm-Région Languedoc Roussillon

Labex Epigenmed

Fondation pour la Recherche Médicale

Publisher

Proceedings of the National Academy of Sciences

Subject

Multidisciplinary

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