MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint

Author:

Smith Benjamin A. H.12ORCID,Deutzmann Anja3ORCID,Correa Kristina M.4,Delaveris Corleone S.14ORCID,Dhanasekaran Renumathy5,Dove Christopher G.67,Sullivan Delaney K.3,Wisnovsky Simon8,Stark Jessica C.14,Pluvinage John V.9,Swaminathan Srividya31011,Riley Nicholas M.4ORCID,Rajan Anand12,Majeti Ravindra67,Felsher Dean W.313,Bertozzi Carolyn R.1414ORCID

Affiliation:

1. Sarafan ChEM-H, Stanford University, Stanford, CA 94305

2. Department of Chemical and Systems Biology, Stanford University, Stanford, CA 94305

3. Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305

4. Department of Chemistry, Stanford University, Stanford, CA 94305

5. Division of Gastroenterology and Hepatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305

6. Division of Hematology, Department of Medicine, Stanford University, Stanford, CA 94305

7. Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA 94305

8. Faculty of Pharmaceutical Sciences, University of British Columbia, British Columbia, BC V6T 1Z3, Canada

9. Department of Neurology, University of California, San Francisco, CA 94143

10. Department of Systems Biology, Beckman Research Institute of City of Hope, Monrovia, CA 91016

11. Department of Pediatrics, Beckman Research Institute of City of Hope, Duarte, CA 91010

12. Department of Pathology, University of Iowa, Iowa City, IA 52242

13. Department of Pathology, Stanford University School of Medicine, Stanford, CA 94305

14. Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305

Abstract

The Siglecs (sialic acid-binding immunoglobulin-like lectins) are glycoimmune checkpoint receptors that suppress immune cell activation upon engagement of cognate sialoglycan ligands. The cellular drivers underlying Siglec ligand production on cancer cells are poorly understood. We find the MYC oncogene causally regulates Siglec ligand production to enable tumor immune evasion. A combination of glycomics and RNA-sequencing of mouse tumors revealed the MYC oncogene controls expression of the sialyltransferase St6galnac4 and induces a glycan known as disialyl-T. Using in vivo models and primary human leukemias, we find that disialyl-T functions as a “don’t eat me” signal by engaging macrophage Siglec-E in mice or the human ortholog Siglec-7, thereby preventing cancer cell clearance. Combined high expression of MYC and ST6GALNAC4 identifies patients with high-risk cancers and reduced tumor myeloid infiltration. MYC therefore regulates glycosylation to enable tumor immune evasion. We conclude that disialyl-T is a glycoimmune checkpoint ligand. Thus, disialyl-T is a candidate for antibody-based checkpoint blockade, and the disialyl-T synthase ST6GALNAC4 is a potential enzyme target for small molecule-mediated immune therapy.

Funder

HHS | NIH | National Cancer Institute

Emerson Collective

HHS | NIH | National Institute of General Medical Sciences

Lymphoma Research Foundation

SU | Chemistry, Engineering and Medicine for Human Health, Stanford University

HHS | NIH | National Institute on Aging

Gouvernement du Canada | Canadian Institutes of Health Research

Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada

Leukemia and Lymphoma Society

American Society of Hematology

American Cancer Society

Publisher

Proceedings of the National Academy of Sciences

Subject

Multidisciplinary

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