DNA polymerase delta governs parental histone transfer to DNA replication lagging strand

Author:

Tian Congcong1ORCID,Zhang Qin2ORCID,Jia Jing3,Zhou Jiaqi1ORCID,Zhang Ziwei1,Karri Srinivasu3ORCID,Jiang Jiuhang14,Dickinson Quinn3,Yao Yuan1ORCID,Tang Xiaorong15ORCID,Huang Yuxin14,Guo Ting167,He Ziwei8,Liu Zheng8ORCID,Gao Yuan9,Yang Xinran1ORCID,Wu Yuchun110,Chan Kui Ming1112,Zhang Daoqin13,Han Junhong2ORCID,Yu Chuanhe3,Gan Haiyun1ORCID

Affiliation:

1. Shenzhen Key Laboratory of Synthetic Genomics, Guangdong Provincial Key Laboratory of Synthetic Genomics, Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China

2. Department of Biotherapy, Cancer Center and State Laboratory of Biotherapy, and Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Sichuan University, Chengdu, Sichuan Province 610041, China

3. Hormel Institute, University of Minnesota, Austin, MN 55912

4. College of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong 510642, China

5. Cancer Centre, Faculty of Health Sciences, University of Macau, Macau, China

6. School of Life Sciences, Henan University, Kaifeng 475004, China

7. Shenzhen Research Institute of Henan University, Shenzhen 518000, China

8. Kobilka Institute of Innovative Drug Discovery, School of Medicine, Chinese University of Hong Kong, Shenzhen 518172, China

9. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724

10. Pathology and Pathophysiology Basic Medical School, Qingdao University, Qindao 266000, China

11. Department of Biomedical Sciences, City University of Hong Kong, Hong Kong Special Administration Region, China

12. Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen 518172, China

13. Division of Critical Care Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305

Abstract

Chromatin replication is intricately intertwined with the recycling of parental histones to the newly duplicated DNA strands for faithful genetic and epigenetic inheritance. The transfer of parental histones occurs through two distinct pathways: leading strand deposition, mediated by the DNA polymerase ε subunits Dpb3/Dpb4, and lagging strand deposition, facilitated by the MCM helicase subunit Mcm2. However, the mechanism of the facilitation of Mcm2 transferring parental histones to the lagging strand while moving along the leading strand remains unclear. Here, we show that the deletion of Pol32, a nonessential subunit of major lagging-strand DNA polymerase δ, results in a predominant transfer of parental histone H3–H4 to the leading strand during replication. Biochemical analyses further demonstrate that Pol32 can bind histone H3–H4 both in vivo and in vitro. The interaction of Pol32 with parental histone H3–H4 is disrupted through the mutation of the histone H3–H4 binding domain within Mcm2. Our findings identify the DNA polymerase δ subunit Pol32 as a critical histone chaperone downstream of Mcm2, mediating the transfer of parental histones to the lagging strand during DNA replication.

Funder

MOST | National Key Research and Development Program of China

Major Program of the National Natural Science Foundation of China

Strategic Priority Research Program of Chinese Academy of Science

NIH grant

MOST | National Natural Science Foundation of China

Guangdong Province Fund for Distinguished Young Scholars

Shenzhen Institute of Synthetic Biology

shenzhen Medical Research Funds

Publisher

Proceedings of the National Academy of Sciences

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