A correction to the exact test based on the Ewens sampling distribution

Author:

Slatkin Montgomery

Abstract

SummaryThe exact test for neutrality based on the Ewens sampling distribution described previously (Slatkin, 1994) is not correct. The problem is that the test as described is based on the probability of the ordered configuration of numbers of alleles, while it should be based on the probability of the unordered configuration. The correctly implemented exact test leads to results that are similar to those from the homozygosity test proposed by Watterson (1977) for relatively small sample sizes but can still differ substantially for larger sample sizes. Programs to perform the exact test are available from the author.

Publisher

Hindawi Limited

Subject

Genetics,General Medicine

Reference6 articles.

1. Heterosis or neutrality?;Watterson;Genetics,1977

2. Computer algorithm for obtaining a random set of allele frequencies for a locus in an equilibrium population;Stewart;Genetics,1977

3. Nearly identical distributions of xanthine dehydrogenase in two populations of Drosophila pseudoobscura;Keith;Molecular Biology and Evolution,1985

4. The sampling theory of selectively neutral alleles

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