Generating explanations for biomedical queries-Reference-Cited by-同舟云学术

Generating explanations for biomedical queries

Published:2013-12-17 Issue:1 Volume:15 Page:35-78
ISSN:1471-0684
Container-title:Theory and Practice of Logic Programming
language:en
Short-container-title:Theory and Practice of Logic Programming

Author:

ERDEM ESRA,OZTOK UMUT

Abstract

AbstractWe introduce novel mathematical models and algorithms to generate (shortest or k different) explanations for biomedical queries, using answer set programming. We implement these algorithms and integrate them in BioQuery-ASP. We illustrate the usefulness of these methods with some complex biomedical queries related to drug discovery, over the biomedical knowledge resources PharmGKB, DrugBank, BioGRID, CTD, SIDER, Disease Ontology, and Orphadata.

Publisher

Cambridge University Press (CUP)

Subject

Artificial Intelligence,Computational Theory and Mathematics,Hardware and Architecture,Theoretical Computer Science,Software

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