Consensus assessment of the contamination level of publicly available cyanobacterial genomes

Author:

Cornet Luc,Meunier Loïc,Van Vlierberghe Mick,Léonard Raphaël R.,Durieu Benoit,Lara Yannick,Misztak Agnieszka,Sirjacobs Damien,Javaux Emmanuelle J.,Philippe Hervé,Wilmotte Annick,Baurain DenisORCID

Funder

FP7 Ideas: European Research Council

TULIP Laboratory of Excellence

BELSPO Interuniversity Attraction Pole Planet TOPERS

Fédération Wallonie-Bruxelles

Fonds De La Recherche Scientifique - FNRS

Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture

Publisher

Public Library of Science (PLoS)

Subject

Multidisciplinary

Reference80 articles.

1. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs;FA Simão;Bioinformatics,2015

2. QUAST: quality assessment tool for genome assemblies;A Gurevich;Bioinformatics,2013

3. Phylogeny-aware identification and correction of taxonomically mislabeled sequences;AM Kozlov;Nucleic Acids Res,2016

4. Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions;M Ballenghien;BMC Biol,2017

5. Unexpected cross-species contamination in genome sequencing projects;S Merchant;PeerJ,2014

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