A unified framework for unconstrained and constrained ordination of microbiome read count data-Reference-Cited by-同舟云学术

A unified framework for unconstrained and constrained ordination of microbiome read count data

Published:2019-02-13 Issue:2 Volume:14 Page:e0205474
ISSN:1932-6203
Container-title:PLOS ONE
language:en
Short-container-title:PLoS ONE

Author:

Hawinkel Stijn^ORCID,Kerckhof Frederiek-Maarten,Bijnens Luc^ORCID,Thas Olivier

Funder

Janssen Pharmaceuticals

Publisher

Public Library of Science (PLoS)

Subject

Multidisciplinary

Reference63 articles.

1. Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology;E Stackebrandt;International Journal of Systematic and Evolutionary Microbiology,1994

2. Principal Coordinates Analysis;JC Gower,2005

3. Multidimensional Psychophysics;Richardson;Psychological Bulletin,1938

4. Oksanen, J, Blanchet, FG, Friendly, M, Kindt, R, Legendre, P, McGlinn, D, et al. vegan: Community Ecology Package; 2017. Available from: https://CRAN.R-project.org/package=vegan.

5. Distance-based multivariate analyses confound location and dispersion effects;DI Warton;Methods in Ecology and Evolution,2012

Cited by 14 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Comparative Analysis of Core Microbiome Assignments: Implications for Ecological Synthesis;mSystems;2023-02-23

2. llperm: a permutation of regressor residuals test for microbiome data;BMC Bioinformatics;2022-12-12

3. Concurrent ordination: Simultaneous unconstrained and constrained latent variable modelling;Methods in Ecology and Evolution;2022-12-08

4. Pitfalls in the statistical analysis of microbiome amplicon sequencing data;Molecular Ecology Resources;2022-11-27

5. DivCom: A Tool for Systematic Partition of Groups of Microbial Profiles Into Intrinsic Subclusters and Distance-Based Subgroup Comparisons;Frontiers in Bioinformatics;2022-05-12