Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators

Author:

Strocchi MarinaORCID,Longobardi StefanoORCID,Augustin Christoph M.ORCID,Gsell Matthias A. F.,Petras Argyrios,Rinaldi Christopher A.,Vigmond Edward J.,Plank Gernot,Oates Chris J.,Wilkinson Richard D.,Niederer Steven A.

Abstract

Cardiac pump function arises from a series of highly orchestrated events across multiple scales. Computational electromechanics can encode these events in physics-constrained models. However, the large number of parameters in these models has made the systematic study of the link between cellular, tissue, and organ scale parameters to whole heart physiology challenging. A patient-specific anatomical heart model, or digital twin, was created. Cellular ionic dynamics and contraction were simulated with the Courtemanche-Land and the ToR-ORd-Land models for the atria and the ventricles, respectively. Whole heart contraction was coupled with the circulatory system, simulated with CircAdapt, while accounting for the effect of the pericardium on cardiac motion. The four-chamber electromechanics framework resulted in 117 parameters of interest. The model was broken into five hierarchical sub-models: tissue electrophysiology, ToR-ORd-Land model, Courtemanche-Land model, passive mechanics and CircAdapt. For each sub-model, we trained Gaussian processes emulators (GPEs) that were then used to perform a global sensitivity analysis (GSA) to retain parameters explaining 90% of the total sensitivity for subsequent analysis. We identified 45 out of 117 parameters that were important for whole heart function. We performed a GSA over these 45 parameters and identified the systemic and pulmonary peripheral resistance as being critical parameters for a wide range of volumetric and hemodynamic cardiac indexes across all four chambers. We have shown that GPEs provide a robust method for mapping between cellular properties and clinical measurements. This could be applied to identify parameters that can be calibrated in patient-specific models or digital twins, and to link cellular function to clinical indexes.

Funder

Centre For Medical Engineering, King’s College London

National institute of health

European Research Council

British Heart Foundation

Engineering and Physical Sciences Research Council

Alan Turing Institute

Agence Nationale de la Recherche

HORIZON EUROPE European Research Council

Austrian Science Fund

State of Upper Austria

Publisher

Public Library of Science (PLoS)

Subject

Computational Theory and Mathematics,Cellular and Molecular Neuroscience,Genetics,Molecular Biology,Ecology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics

Reference88 articles.

1. Computational models in cardiology;SA Niederer;Nature Reviews Cardiology,2019

2. Simulating ventricular systolic motion in a four-chamber heart model with spatially varying Robin boundary conditions to model the effect of the pericardium;M Strocchi;Journal of Biomechanics,2020

3. A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations;M Strocchi;PLoS One,2020

4. The importance of the pericardium for cardiac biomechanics: From physiology to computational modeling;MR Pfaller;Biomechanics and modeling in mechanobiology,2018

5. Anatomically accurate high resolution modeling of human whole heart electromechanics: a strongly scalable algebraic multigrid solver method for nonlinear deformation;CM Augustin;J Comput Phys,2016

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