PairMotif: A New Pattern-Driven Algorithm for Planted (l, d) DNA Motif Search

Author:

Yu Qiang,Huo Hongwei,Zhang Yipu,Guo Hongzhi

Publisher

Public Library of Science (PLoS)

Subject

Multidisciplinary

Reference31 articles.

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3. Boucher C, Brown DG, Church P (2007) A graph clustering approach to weak motif recognition. In: Giancarlo R, Hannenhalli S, eds. Proceedings of the 7th International Workshop on Algorithms in Bioinformatics. Philadelphia: LNCS. 149–160.

4. Detecting subtle sequence signals: a Gibb’s sampling strategy for multiple alignment;CE Lawrence;Science,1993

5. Bailey TL, Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. In: Altman R, Brutlag D, eds. Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology. California: AAAI Press. 28–36.

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1. Exploring Scalable Parallelization for Edit Distance-Based Motif Search;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2023-03-01

2. A Comparative Analysis for Generating Common d-Neighborhood on Planted Motif Search Problem;Intelligent Computing & Optimization;2022-10-21

3. A Review on Planted (l, d) Motif Discovery Algorithms for Medical Diagnose;Sensors;2022-02-05

4. LL-PMS8: A time efficient approach to solve planted motif search problem;Journal of King Saud University - Computer and Information Sciences;2020-11

5. An efficient algorithm for identifying (ℓ, d) motif from huge DNA datasets;Journal of Ambient Intelligence and Humanized Computing;2020-05-01

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