Identifying the strains of dengue circulating in the western province of Sri Lanka during 2019–2022

Author:

Abeygoonawardena Harshi,Dassanayake Kanchana,Kariyawasam Jayani,Chathuranga Teshan,Sundralingam Tharmini,Gunasekara Hansani,Wevita Sathyani,Premawansa Gayani,Premawansa Sunil,Wijewickrama Ananda,Wijesinghe Namal,Navaratne Varuna,Weiskopf DanielaORCID,Sette AlessandroORCID,Punchihewa Chandanamali,De Silva Aruna DharshanORCID

Abstract

A study conducted from July 2019 to May 2022 at several hospitals in the Western Province, Sri Lanka, focused on dengue virus strains during the COVID-19 pandemic. Among 417 febrile patients, 47% were PCR-positive for dengue. Serotyping revealed DENV-1 (12.8%), DENV-2 (46.4%), DENV-3 (37.2%), and DENV-4 (3.6%). Sequencing identified two genotypically distinct variants of DENV-3 and two genotypically distinct variants of DENV-1, while DENV-2 showed a single genotype cluster. Notably, the study found concurrent circulation of two DENV-3 and two DENV-1 genotypes, along with DENV-2, during the pandemic in the area. This data suggests the presence of multiple dengue strains, including several DENV-1 and DENV-3 variants, without major epidemic outbreaks reported in the Western Province. Continuous monitoring and research are essential to understand the dynamics of these dengue strains in the context of the COVID-19 pandemic.

Funder

NIH/NIAID

Takeda Vaccines

NIH

Publisher

Public Library of Science (PLoS)

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