CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

Author:

Delport Wayne,Scheffler Konrad,Botha Gordon,Gravenor Mike B.,Muse Spencer V.,Kosakovsky Pond Sergei L.

Publisher

Public Library of Science (PLoS)

Subject

Computational Theory and Mathematics,Cellular and Molecular Neuroscience,Genetics,Molecular Biology,Ecology,Modelling and Simulation,Ecology, Evolution, Behavior and Systematics

Reference57 articles.

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2. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.;SV Muse;Mol Biol Evol,1994

3. A codon-based model of nucleotide substitution for protein-coding DNA sequences.;N Goldman;Mol Biol Evol,1994

4. Investigating protein-coding sequence evolution with probabilistic codon substitution models.;M Anisimova;Mol Biol Evol,2009

5. Models of coding sequence evolution.;W Delport;Brief Bioinform,2009

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