In vivo evolution to echinocandin resistance and increasing clonal heterogeneity in Candida auris during a difficult-to-control hospital outbreak, Italy, 2019 to 2022

Author:

Codda Giulia1,Willison Edward2,Magnasco Laura3,Morici Paola2,Giacobbe Daniele Roberto43,Mencacci Antonella56,Marini Daniele56,Mikulska Malgorzata43,Bassetti Matteo43,Marchese Anna21,Di Pilato Vincenzo1ORCID

Affiliation:

1. Department of Surgical Sciences and Integrated Diagnostics (DISC), University of Genoa, Genoa, Italy

2. Microbiology Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy

3. Infectious Diseases Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy

4. Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy

5. Microbiology, Santa Maria della Misericordia Hospital, Perugia, Italy

6. Medical Microbiology, Department of Medicine, University of Perugia, Perugia, Italy

Abstract

A difficult-to-control outbreak of Candida auris is ongoing in a large tertiary care hospital in Liguria, Italy, where it first emerged in 2019. In a retrospective analysis, 503 cases of C. auris carriage or infection were observed between July 2019 and December 2022. Genomic surveillance identified putative cases that no longer occurred as part of one defined outbreak and the emergence of echinocandin (pandrug) resistance following independent selection of FKS1 S639F and FKS1 F635Y mutants upon prolonged exposure to caspofungin and/or anidulafungin.

Publisher

European Centre for Disease Control and Prevention (ECDC)

Subject

Virology,Public Health, Environmental and Occupational Health,Epidemiology

Reference18 articles.

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2. Increasing number of cases and outbreaks caused by Candida auris in the EU/EEA, 2020 to 2021.;Kohlenberg;Euro Surveill,2022

3. Candida auris as an Emergent Public Health Problem: A Current Update on European Outbreaks and Cases.;Geremia;Healthcare (Basel),2023

4. Isolation of Candida auris from invasive and non-invasive samples of a patient suffering from vascular disease, Italy, July 2019.;Crea;Euro Surveill,2019

5. European Centre for Disease Prevention and Control (ECDC). Candida auris outbreak in healthcare facilities in northern Italy, 2019-2021. Stockholm: ECDC; 2022. Available from: https://www.ecdc.europa.eu/en/publications-data/rapid-risk-assessment-candida-auris-outbreak-healthcare-facilities-northern-italy

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