1. These authors contributed equally to this work and share first authorship.
2. National Reference Center for Whooping Cough and other Bordetella infections, Institut Pasteur, Paris, France
3. Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France
4. Laboratoire Eurofins Biomnis, Lyon, France
5. Laboratoire Cerba, Saint Ouen l’Aumône, France
6. Santé publique France, Infectious Diseases Department, The French Public Health Agency, Saint-Maurice, France
7. Centre for Research in Epidemiology and Statistics (Inserm UMR 1153), Université Paris Cité, Paris, France
8. Department of General Paediatrics and Paediatric Infectious Diseases, Université Paris Cité, Hôpital Necker-Enfants Malades, APHP, Paris, France
9. These authors co-supervised the work and share last authorship.