Osmotic pressure effects identify dehydration upon cytochrome c–cytochrome c oxidase complex formation contributing to a specific electron pathway formation

Author:

Sato Wataru1,Hitaoka Seiji2,Uchida Takeshi13ORCID,Shinzawa-Itoh Kyoko4,Yoshizawa Kazunari2,Yoshikawa Shinya4,Ishimori Koichiro13ORCID

Affiliation:

1. Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan

2. Institute for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0315, Japan

3. Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan

4. Picobiology Institute, Graduate School of Life Science, University of Hyogo, Ako-gun, Hyogo 678-1297, Japan

Abstract

In the electron transfer (ET) reaction from cytochrome c (Cyt c) to cytochrome c oxidase (CcO), we determined the number and sites of the hydration water released from the protein surface upon the formation of the ET complex by evaluating the osmotic pressure dependence of kinetics for the ET from Cyt c to CcO. We identified that ∼20 water molecules were dehydrated in complex formation under turnover conditions, and systematic Cyt c mutations in the interaction site for CcO revealed that nearly half of the released hydration water during the complexation were located around Ile81, one of the hydrophobic amino acid residues near the exposed heme periphery of Cyt c. Such a dehydration dominantly compensates for the entropy decrease due to the association of Cyt c with CcO, resulting in the entropy-driven ET reaction. The energetic analysis of the interprotein interactions in the ET complex predicted by the docking simulation suggested the formation of hydrophobic interaction sites surrounding the exposed heme periphery of Cyt c in the Cyt c–CcO interface (a ‘molecular breakwater'). Such sites would contribute to the formation of the hydrophobic ET pathway from Cyt c to CcO by blocking water access from the bulk water phase.

Publisher

Portland Press Ltd.

Subject

Cell Biology,Molecular Biology,Biochemistry

Cited by 3 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Regulation of electron transfer in the terminal step of the respiratory chain;Biochemical Society Transactions;2023-07-06

2. Protein-complex stability in cells and in vitro under crowded conditions;Current Opinion in Structural Biology;2021-02

3. Protein–Peptide Binding Energetics under Crowded Conditions;The Journal of Physical Chemistry B;2020-09-16

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