Inter-STOP symbol distances for the identification of coding regions-Reference-Cited by-同舟云学术

Inter-STOP symbol distances for the identification of coding regions

Published:2013-12-01 Issue:3 Volume:10 Page:31-39
ISSN:1613-4516
Container-title:Journal of Integrative Bioinformatics
language:
Short-container-title:

Author:

Bastos Carlos A. C.¹,Afreixo Vera²,Garcia Sara P.¹,Pinho Armando J.¹

Affiliation:

1. 1Signal Processing Lab, IEETA and Department of Electronics, Telecommunications and Informatics, University of Aveiro, 3810-193 Aveiro, Portugal

2. 2CIDMA – Center for Research and Development in Mathematics and Applications, IEETA and Department of Mathematics, University of Aveiro, 3810-193 Aveiro, Portugal

Abstract

Summary In this study we explore the potential of inter-STOP symbol distances for finding coding regions in DNA sequences. We use the distance between STOP symbols in the DNA sequence and a chi-square statistic to evaluate the nonhomogeneity of the three possible reading frames and the occurrence of one long distance in one of the frames. The results of this exploratory study suggest that inter-STOP symbol distances have strong ability to discriminate coding regions in prokaryotes and simple eukaryotes.

Publisher

Walter de Gruyter GmbH

Subject

General Medicine

Link

https://www.degruyter.com/document/doi/10.1515/jib-2013-230/pdf

Reference1 articles.

1. ttp cr ea tiv ec om m on or lic en se by nd Journal of Integrative http imbio de Company;Sokal;Bioinformatics journal,2013

Cited by 1 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Distribution of Distances Between Symmetric Words in the Human Genome: Analysis of Regular Peaks;Interdisciplinary Sciences: Computational Life Sciences;2019-03-25