BGRS: bioinformatics of genome regulation and data integration-Reference-Cited by-同舟云学术

BGRS: bioinformatics of genome regulation and data integration

Published:2023-09-01 Issue:3 Volume:20 Page:
ISSN:1613-4516
Container-title:Journal of Integrative Bioinformatics
language:en
Short-container-title:

Author:

Orlov Yuriy L.¹²³⁴^ORCID,Chen Ming⁵,Kolchanov Nikolay A.¹²,Hofestädt Ralf⁶

Affiliation:

1. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences , 630090 Novosibirsk , Russia

2. Life Sciences Department , Novosibirsk State University , 630090 Novosibirsk , Russia

3. The Digital Health Institute, I.M. Sechenov First Moscow State Medical University of the Ministry of Health of the Russian Federation (Sechenov University) , 119991 Moscow , Russia

4. Agrarian and Technological Institute, Peoples’ Friendship University of Russia , 117198 Moscow , Russia

5. Department of Bioinformatics , College of Life Sciences, Zhejiang University , Hangzhou 310058 , China

6. Faculty of Technology, Bielefeld University , Bielefeld , Germany

Funder

RSF-NSFC joint project "Smart Crop" - Cognitive Platform for Reconstruction, Visualization and Analysis of Stress Response Networks based on ANDSystem and Multiomics in Rice and Wheat

Publisher

Walter de Gruyter GmbH

Subject

General Medicine

Link

https://www.degruyter.com/document/doi/10.1515/jib-2023-0032/pdf

Reference45 articles.

1. Orlov, Y, Xu, H, Afonnikov, D, Lim, B, Heng, JC, Yuan, P, et al.. Computer and statistical analysis of transcription factor binding and chromatin modifications by ChIP-seq data in embryonic stem cell. J Integr Bioinform 2012;9:211. https://doi.org/10.2390/biecoll-jib-2012-211.

2. Orlov, Y, Dobrovolskaya, O, Chen, M, Hofestädt, R. Bioinformatics of genome regulation and structure – 2020 papers collection. J Integr Bioinform 2020;17:20200038. https://doi.org/10.1515/jib-2020-0038.

3. Heinemeyer, T, Wingender, E, Reuter, I, Hermjakob, H, Kel, AE, Kel, OV, et al.. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res 1998;26:362–7. https://doi.org/10.1093/nar/26.1.362.

4. Chen, M, Harrison, A, Shanahan, H, Orlov, Y. Biological big bytes: integrative analysis of large biological datasets. J Integr Bioinform 2017;14:20170052. https://doi.org/10.1515/jib-2017-0052.

5. Dergilev, AI, Orlova, NG, Dobrovolskaya, OB, Orlov, YL. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data. J Integr Bioinform 2022;19:20200036. https://doi.org/10.1515/jib-2020-0036.