Phylogenetic analysis of Aquilaria Lam. (Thymelaeaceae) based on DNA barcoding-Reference-Cited by-同舟云学术

Phylogenetic analysis of Aquilaria Lam. (Thymelaeaceae) based on DNA barcoding

Published:2018-12-22 Issue:6 Volume:73 Page:517-523
ISSN:1437-434X
Container-title:Holzforschung
language:en
Short-container-title:

Author:

Feng Tingting¹,Li Qiwei¹^ORCID,Wang Yesheng¹,Qiu Simin¹,He Mengling²,Zhang Weimin³,Dong Jun²,Zhu Shuang¹

Affiliation:

1. Center for Bioresources and Drug Discovery, Guangdong Province Key Laboratory for Biotechnology Drug Candidates, School of Biosciences and Bio-pharmaceutics , Guangdong Pharmaceutical University , Guangzhou 510006 , PR China

2. Key Laboratory of State Administration of Traditional Chinese Medicine for Production and Development of Cantonese Medicinal Materials, School of Traditional Chinese Medicine , Guangdong Pharmaceutical University , Guangzhou 510006 , PR China

3. State Key Laboratory of Applied Microbiology Southern China , Guangdong Institute of Microbiology , Guangdong 510070 , PR China

Abstract

Abstract Aquilaria Lam. is an important group of trees that produce agarwood, which is widely used for manufacturing medicine, perfumes and incense. The members of the genus Aquilaria are close to being extinct due to illegal harvesting and are now protected in many countries. In this study, five DNA barcodes [internal transcribed spacer (ITS), maturase K (matK), psbA-trnH, ribulose bisphosphate carboxylase (rbcL) and trnL-trnF] and their combinations were evaluated for the discrimination of the major (16 out of 21) species of Aquilaria based on three criteria: sequence variation, genetic distances and the discrimination ability. In addition, we attempted to determine the phylogenetic relationship between Aquilaria and Gyrinops species using three phylogenetic analysis methods. We observed that the combination barcode ITS+trnL-trnF had a good discrimination ability based on the best match and best close match methods, provided more genetic information, and clearly indicated the comprehensive phylogenetic relationship between most Aquilaria and Gyrinops species. Considering the overall performance of these barcodes, the ITS+trnL-trnF is a suitable barcode for the identification of Aquilaria species.

Funder

National Natural Science Foundation of China

Publisher

Walter de Gruyter GmbH

Subject

Biomaterials

Link

https://www.degruyter.com/document/doi/10.1515/hf-2018-0127/pdf

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