Theoretical and experimental solid state studies of Ethyl 1-benzyl-2-(thiophen-3-yl)-1H-benzo[d]imidazole-5-carboxylate

Author:

Madan Kumar Shankar1,Kumar Vasantha23,Al-Ghorbani Mohammed4,Shivaram Holla Bantwala2,Poojary Boja3,Praveen Padikkaruvanth5,Chandra Nayak Siddaiah6,Mohan Janani S.7,Thamotharan Subbiah7,Shamprasad Varija Raghu8,Lokanath Neratur Krishnappagowda9,Al-Zaqri Nabil10,Alsalme Ali10

Affiliation:

1. IOE, Vijnana Bhavan , University of Mysore , Mysore 57006, India

2. Department of Chemistry , SDM College (Autonomous) , Ujire 574240, India

3. Department of Chemistry , Mangalore University , Mangalagangothri 574199, India

4. Department of Chemistry , University of Thamar , Thamar , Yemen

5. Department of Materials Science , Mangalore University , Mangalagangothri 574199, India

6. Department of Studies in Biotechnology , University of Mysore , Mysore 57006, India

7. Biomolecular Crystallography Laboratory, Department of Bioinformatics, School of Chemical and Biotechnology , SASTRA Deemed University 613401, Thanjavur , India

8. Neurogenetics Laboratory, Department of Applied Zoology , Mangalore University , Mangalagangothri 574199, India

9. Department of Studies in Physics , University of Mysore , Mysore 570006, India

10. Department of Chemistry, College of Science , King Saud University , P. O. Box 2455 , Riyadh 11451, Saudi Arabia

Abstract

Abstract The title compound Ethyl 1-benzyl-2-(thiophen-3-yl)-1H-benzo[d]imidazole-5-carboxylate (BI) is prepared and characterized using spectroscopic methods. The theoretical optimization and three dimensional molecular structure are confirmed by X-ray diffraction method (single crystal). The C–H…π intermolecular interactions stabilize the crystal structure. The intermolecular contacts in the crystal structure are quantified using Hirshfeld surfaces and the crystal packing is elucidated using 3D energy frameworks analysis. In the frameworks, the dispersion energy term is dominated over the electrostatic energy term. The structural optimization was carried out with B3LYP/6-311++G (d, p) level of theory. The visual representations of positive and negative potentials (electrostatic potential) are mapped on the electron density isosurface. The band gap energy (HOMO-LUMO) of the molecule is calculated to be 4.36 eV. Structural conformation of BI is compared with similar structures.

Publisher

Walter de Gruyter GmbH

Subject

Inorganic Chemistry,Condensed Matter Physics,General Materials Science

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