Maximal B-factors in protein crystal structures

Author:

Carugo Oliviero12

Affiliation:

1. Department of Chemistry , University of Pavia , viale Taramelli 12 , I-27100 Pavia , Italy

2. Department of Structural and Computational Biology , University of Vienna , Campus Vienna Biocenter 5 , A-1030 Vienna , Austria

Abstract

Abstract Since the contribution of proteins atoms with exceptionally large B-factors, much larger than those of other atoms, to the observed structure factors is negligible, it is therefore recommended to consider with a care the parts of the models where B-factors are inflated to extremely large values. Otherwise, molecular biologists risk to over-interpret structural data, since the positions of these atoms is highly uncertain. In the present communication, maximal B-factor values, over which the atoms can be considered ‘invisible’, are estimated based on the relationships between B-factors and solvent accessible surface areas.

Publisher

Walter de Gruyter GmbH

Subject

Inorganic Chemistry,Condensed Matter Physics,General Materials Science

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