Sulfur(lone-pair)…π interactions with FAD in flavoenzymes

Author:

Silva Rui F.N.1,Sacco Antônio César S.1,Caracelli Ignez2,Zukerman-Schpector Julio3,Tiekink Edward R.T.4

Affiliation:

1. Programa de Pós-graduação em Biotecnologia, Universidade Federal de São Carlos, C.P. 676 , São Carlos, SP, 13565-905 , Brazil

2. BioMat, Departamento de Física , Universidade Federal de São Carlos, C. P. 676 , São Carlos, SP, 13565-905 , Brazil

3. Laboratório de Cristalografia, Estereodinâmica e Modelagem Molecular , Departamento de Química , Universidade Federal de São Carlos, C.P. 676 , São Carlos, SP, 13565-905 , Brazil

4. Research Centre for Crystalline Materials, School of Science and Technology , Sunway University , 47500 Bandar Sunway, Selangor Darul Ehsan , Malaysia

Abstract

Abstract The interactions of π-systems with lone-pairs of electrons are known and have been described in biological systems, involving lone-pairs derived from metals, metalloids, sulfur, oxygen and nitrogen. This study describes a bibliographic survey of the disulfide-bound sulfur(lone-pair) interactions with π-systems residing in the flavin adenine dinucleotide (FAD) cofactor of oxidoreductase enzymes (flavoenzymes). Thus, of the 172 oxidoreductase enzymes evaluated for gamma-S(lone-pair)…π(FAD) interactions, 96 proteins (56%) exhibited these interactions corresponding; 61% of 350 the constituent monomers featured at least one gamma-S(lone-pair)…π(FAD) interaction. Two main points of association between the S(lone-pair) and the isoalloxazine moiety of FAD were identified, namely at the centroid of the bond linking the uracil and pyrazine rings (60%), and the centroid of the uracil ring (37%). Reflecting the nature of the secondary structure in three prominent classes of oxidoreductase enzymes: glutathione disulfide reductases (GR; 21 proteins), trypanothione disulfide reductases (TR, 14) and sulfhydryl oxidases (SOX, 22), the approach of the gamma-S(lone-pair) to the FAD residue was to the si-face of the isoalloxazine ring system, i.e. to the opposite side as the carbonyl residue, for all GR and TR examples, and to the re-face for all SOX examples. Finally, the attractive nature of the gamma-S(lone-pair)…π(FAD) interactions was confirmed qualitatively by an examination of the non-covalent interaction plots.

Publisher

Walter de Gruyter GmbH

Subject

Inorganic Chemistry,Condensed Matter Physics,General Materials Science

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