ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis-Reference-Cited by-同舟云学术

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ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis

Published:2023-03-30 Issue:1 Volume:15 Page:
ISSN:1949-0976
Container-title:Gut Microbes
language:en
Short-container-title:Gut Microbes

Author:

Ru Jinlong¹²,Khan Mirzaei Mohammadali¹²,Xue Jinling¹²,Peng Xue¹³,Deng Li¹²^ORCID

Affiliation:

1. Institute of Virology, Helmholtz Centre Munich, German Research Centre for Environmental Health, Neuherberg, Germany

2. Chair of Prevention of Microbial Diseases, School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany

3. Faculty of Biology, Biocenter, Ludwig Maximilian University of Munich, Munich, Germany

Funder

European Research Council

China Scholarship Council

Publisher

Informa UK Limited

Subject

Infectious Diseases,Microbiology (medical),Gastroenterology,Microbiology

Link

https://www.tandfonline.com/doi/pdf/10.1080/19490976.2023.2192522

Reference55 articles.

1. Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

2. Gut mucosal virome alterations in ulcerative colitis

3. A human gut phage catalog correlates the gut phageome with type 2 diabetes

4. Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner

5. Differences in Gut Virome Related to Barrett Esophagus and Esophageal Adenocarcinoma

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1. Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer;Nature Communications;2024-04-20

2. Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods;mSystems;2024-03-19

3. Exploring Cereal Metagenomics: Unravelling Microbial Communities for Improved Food Security;Microorganisms;2024-03-02

4. Bacteriophages, gut bacteria, and microbial pathways interplay in cardiometabolic health;Cell Reports;2024-02

5. iVirP: An integrative, efficient, and user-friendly pipeline to annotate viral contigs from raw reads of metagenome or VLP sequencing;2024-01-23

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