Strengths and caveats of identifying resistance genes from whole genome sequencing data

Author:

Forde Brian M.1,De Oliveira David M. P.2,Falconer Caitlin1,Graves Bianca3,Harris Patrick N. A.134

Affiliation:

1. University of Queensland, Faculty of Medicine, Uq Centre for Clinical Research, Royal Brisbane and Woman’s Hospital, Herston, Australia

2. University of Queensland, Faculty of Science, School of Chemistry and Molecular Biosciences, St Lucia, Australia

3. Herston Infectious Disease Institute, Royal Brisbane & Women’s Hospital, Herston, Australia

4. Central Microbiology, Pathology Queensland, Royal Brisbane & Women’s Hospital, Herston, Australia

Funder

National Health and Medical Research Council

Publisher

Informa UK Limited

Subject

Virology,Infectious Diseases,Microbiology (medical),Microbiology

Reference161 articles.

1. Wellcome. The Global Response to AMR: momentum, success, and critical gaps. (London, 2020). [cited27 Sep 2021]. https://cms.wellcome.org/sites/default/files/2020-11/wellcome-global-response-amr-report.pdf

2. Antimicrobial Resistance in ESKAPE Pathogens

3. Centers for Disease Control and Prevention. Antibiotic resistant threats in the United States. 2019. https://www.cdc.gov/drugresistance/pdf/threats-report/2019-ar-threats-report-508.pdf. (Accessed. 2020 Jan 15th)

4. Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis

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