MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes-Reference-Cited by-同舟云学术

MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes

Published:2018-09-02 Issue:9 Volume:82 Page:1515-1517
ISSN:0916-8451
Container-title:Bioscience, Biotechnology, and Biochemistry
language:en
Short-container-title:

Author:

Arai Wataru¹,Taniguchi Takeaki²,Goto Susumu³,Moriya Yuki³,Uehara Hideya⁴,Takemoto Kazuhiro⁵,Ogata Hiroyuki⁶,Takami Hideto¹

Affiliation:

1. Microbial Genome Research Group, Yokohama Institute, JAMSTEC, Yokohama, Japan

2. Healthcare and Wellness Division, Mitsubishi Research Institute, Tokyo, Japan

3. Database Center for Life Science, Research Organization of Information and Systems, Kashiwa, Japan

4. HPE-SGI Business Unit, Hewlett-Packard Japan, Ltd, Tokyo, Japan

5. Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Fukuoka, Japan

6. Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan

Abstract

ABSTRACT MAPLE is an automated system for inferring the potential comprehensive functions harbored by genomes and metagenomes. To reduce runtime in MAPLE analyzing the massive amino acid datasets of over 1 million sequences, we improved it by adapting the KEGG automatic annotation server to use GHOSTX and verified no substantial difference in the MAPLE results between the original and new implementations.

Funder

Japan Society for the Promotion of Science

Kyoto University

Publisher

Oxford University Press (OUP)

Subject

Organic Chemistry,Molecular Biology,Applied Microbiology and Biotechnology,General Medicine,Biochemistry,Analytical Chemistry,Biotechnology

Link

http://academic.oup.com/bbb/article-pdf/82/9/1515/36831643/bbb1515.pdf

Reference6 articles.

1. Evaluation method for the potential functionome harbored in the genome and metagenome;Takami;BMC Genomics,2012

2. An automated system for evaluation of the potential functionome: MAPLE version 2.1.0;Takami;DNA Res,2016