Base Pairing at the Stem-loop Junction in the SL1 Kissing Complex of HIV-1 RNA: A Thermodynamic Study Probed by Molecular Dynamics Simulation
Author:
Publisher
Informa UK Limited
Subject
Molecular Biology,General Medicine,Structural Biology
Link
http://www.tandfonline.com/doi/pdf/10.1080/10256018808623883
Reference21 articles.
1. Energetic coupling between DNA bending and base pair opening.
2. A single mode of DNA base-pair opening drives imino proton exchange
3. Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations
4. Structure of the dimer a initiation complex of HIV-1 genomic RNA
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1. Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by CHARMM explicit solvent molecular dynamics;Biopolymers;2008-09
2. Insight into the intrinsic flexibility of the SL1 stem-loop from genomic RNA of HIV-1 as probed by molecular dynamics simulation;Biopolymers;2008-03
3. Ligand-escape pathways from the ligand-binding domain of PPARγ receptor as probed by molecular dynamics simulations;European Biophysics Journal;2007-10-11
4. Molecular dynamics simulations of RNA: Anin silico single molecule approach;Biopolymers;2007
5. Conformational Pathway for the Kissing Complex→Extended Dimer Transition of the SL1 Stem-Loop from Genomic HIV-1 RNA as Monitored by Targeted Molecular Dynamics Techniques;Journal of Molecular Biology;2005-08
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