Bayesian hidden Markov models in DNA sequence segmentation using R: the case of Simian Vacuolating virus (SV40)

Author:

Totterdell James A.1,Nur Darfiana2,Mengersen Kerrie L.3

Affiliation:

1. Biostatistician, Waverton, NSW, Australia

2. School of Computer Science, Engineering and Mathematics, Flinders University, Tonsley, SA, Australia

3. School of Mathematical Sciences, Queensland University of Technology and The Australian Research Council (ARC) Centre of Excellence for Mathematical and Statistical Frontiers (ACEMS), Brisbane, QLD, Australia

Funder

Faculty of Science and Engineering and the School of Computer Science and Engineering and Mathematics at Flinders University

Publisher

Informa UK Limited

Subject

Applied Mathematics,Statistics, Probability and Uncertainty,Modeling and Simulation,Statistics and Probability

Reference35 articles.

1. GenBank

2. GenBank. Growth of GenBank and WGS; 2015 [cited 2015 Apr 16]. Available from: http://www.ncbi.nlm.nih.gov/genbank/statistics

3. Statistical analysis of nucleotide sequences

4. SEGMENT: identifying compositional domains in DNA sequences

5. DNA Segmentation Through the Bayesian Approach

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