Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues-Reference-Cited by-同舟云学术

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Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues

Published:2024-02-04 Issue: Volume: Page:1-17
ISSN:2150-1203
Container-title:Mycology
language:en
Short-container-title:Mycology

Author:

Viotti Chloé¹,Chalot Michel¹²,Kennedy Peter G.³,Maillard François³,Santoni Sylvain⁴,Blaudez Damien⁵,Bertheau Coralie¹

Affiliation:

1. CNRS, Chrono-environnement, Université de Franche-Comté, Montbéliard, France

2. Faculté des Sciences et Technologies, Université de Lorraine, Nancy, France

3. Department of Plant & Microbiology, University of Minnesota, St. Paul, MN, USA

4. AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France

5. Université de Lorraine, CNRS, LIEC, Nancy, France

Funder

Ph-D grant from the Ministère de l’Enseignement supérieur, de la Recherche et de l’Innovation

European Union’s Horizon 2020 research and innovation program under Grant Agreement ERA-NET Cofund SusCrop

French PIA project “Lorraine Université d’Excellence” Deepsurf, reference ANR-15-IDEX-04-LUE

the European Union’s Horizon 2020 research and innovation program under Grant Agreement ERA-NET Cofund SusCrop

Publisher

Informa UK Limited

Subject

Infectious Diseases,Microbiology

Link

https://www.tandfonline.com/doi/pdf/10.1080/21501203.2023.2301003

Reference75 articles.

1. Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition

2. High-throughput sequencing view on the magnitude of global fungal diversity

3. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

4. Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome

5. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

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