Recent Advancements in Ribosome Binding Site Prediction, Ribosome Profiling, and Structural Analysis in Prokaryotes
Author:
Publisher
Springer Nature Singapore
Link
https://link.springer.com/content/pdf/10.1007/978-981-97-1769-9_14
Reference24 articles.
1. Bartholomäus A, Kolte B, Mustafayeva A, Goebel I, Fuchs S, Benndorf D, Engelmann S, Ignatova Z (2021) smORFer: a modular algorithm to detect small ORFs in prokaryotes. Nucleic Acids Res 49(15):e89
2. Choudhary S, Li W, Smith DA (2020) Accurate detection of short and long active ORFs using Ribo-seq data. Bioinformatics 36(7):2053–2059
3. Chun SY, Rodriguez CM, Todd PK, Mills RE (2016) SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data. BMC Bioinformatics 17:1–6
4. Clauwaert J, Menschaert G, Waegeman W (2019) DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns. Nucleic Acids Res 47(6):e36
5. Desnoyers G, Bouchard M-P, Massé E (2013) New insights into small RNA-dependent translational regulation in prokaryotes. Trends Genet 29(2):92–98
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