Comprehensive analysis of somatic mutations and structural variations in domestic pig
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Published:2024-08-23
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ISSN:0938-8990
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Container-title:Mammalian Genome
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language:en
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Short-container-title:Mamm Genome
Author:
Kwon Seong GyuORCID, Bae Geon HueORCID, Hong Joo HeeORCID, Choi Jeong-WooORCID, Choi June HyugORCID, Lim Nam SeopORCID, Jeon CheolMinORCID, Mali Nanda MayaORCID, Jun Mee SookORCID, Shin JaeEunORCID, Kim JinSooORCID, Cho Eun-SeokORCID, Han Man-HoonORCID, Oh Ji WonORCID
Publisher
Springer Science and Business Media LLC
Reference51 articles.
1. Abel HJ, Larson DE, Regier AA, Chiang C, Das I, Kanchi KL, Layer RM, Neale BM, Salerno WJ, Reeves C, Buyske S, Abecasis GR, Appelbaum E, Baker J, Banks E, Bernier RA, Bloom T, Boehnke M, Boerwinkle E, Bottinger EP, Brant SR, Burchard EG, Bustamante CD, Chen L, Cho JH, Chowdhury R, Christ R, Cook L, Cordes M, Courtney L, Cutler MJ, Daly MJ, Damrauer SM, Darnell RB, Deluca T, Dinh H, Doddapaneni H, Eichler EE, Ellinor PT, Estrada AM, Farjoun Y, Felsenfeld A, Foroud T, Freimer NB, Fronick C, Fulton L, Fulton R, Gabriel S, Ganel L, Gargeya S, Germer G, Geschwind DH, Gibbs RA, Goldstein DB, Grove ML, Gupta N, Haiman CA, Han Y, Howrigan D, Hu J, Hutter C, Iossifov I, Ji B, Jorde LB, Jun G, Kane J, Kang CJ, Kang HM, Kathiresan S, Kenny EE, Khaira L, Khan Z, Khera A, Kooperberg C, Krasheninina O, Kraus WE, Kugathasan S, Laakso M, Lappalainen T, Locke AE, Loos RJF, Ly A, Maier R, Maniatis T, Le Marchand L, Marcus GM, Mayeux RP, McGovern DPB, Mendoza KS, Menon V, Metcalf GA, Momin Z, Narzisi G, Nelson J, Nessner C, Newberry RD, North KE, Palotie A, Peters U, Ponce J, Pullinger C, Quinlan A, Rader DJ, Rich SS, Ripatti S, Roden DM, Salomaa V, Santibanez J, Shah SH, Shoemaker MB, Sofia H, Stephan T, Stevens C, Targan SR, Taskinen M-R, Tibbetts K, Tolonen C, Turner T, De Vries P, Waligorski J, Walker K, Wang VO, Wigler M, Wilson RK, Winterkorn L, Wojcik G, Xing J, Young E, Yu B, Zhang Y, Matise TC, Muzny DM, Zody MC, Lander ES, Dutcher SK, Stitziel NO, Hall IM (2020) Genomics NCfCD Mapping and characterization of structural variation in 17,795 human genomes. Nature 583:83–89 2. Alexandrov LB, Kim J, Haradhvala NJ, Huang MN, Tian Ng AW, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN, Islam SMA, Lopez-Bigas N, Klimczak LJ, McPherson JR,Morganella S, Sabarinathan R, Wheeler DA, Mustonen V, Alexandrov LB, Bergstrom EN,Boot A, Boutros P, Chan K, Covington KR, Fujimoto A, Getz G, Gordenin DA, Haradhvala NJ, Huang MN, Islam SMA, Kazanov M, Kim J, Klimczak LJ, Lopez-Bigas N, Lawrence M,Martincorena I, McPherson JR, Morganella S, Mustonen V, Nakagawa H, Tian Ng AW, Polak P, Prokopec S, Roberts SA, Rozen SG, Sabarinathan R, Saini N, Shibata T, Shiraishi Y, Stratton MR, Teh BT, Vázquez-García I, Wheeler DA, Wu Y, Yousif F, Yu W, Getz G,Rozen SG, Stratton MR, Aaltonen LA, Abascal F, Abeshouse A, Aburatani H, Adams DJ,Agrawal N, Ahn KS, Ahn S-M, Aikata H, Akbani R, Akdemir KC, Al-Ahmadie H, Al-Sedairy ST, Al-Shahrour F, Alawi M, Albert M, Aldape K, Alexandrov LB, Ally A, Alsop K, Alvarez EG, Amary F, Amin SB, Aminou B, Ammerpohl O, Anderson MJ, Ang Y, Antonello D, Anur P, Aparicio S, Appelbaum EL, Arai Y, Aretz A, Arihiro K, Ariizumi S-i, Armenia J,Arnould L, Asa S, Assenov Y, Atwal G, Aukema S, Auman JT, Aure MRR, Awadalla P, Aymerich M, Bader GD, Baez-Ortega A, Bailey MH, Bailey PJ, Balasundaram M, Balu S, Bandopadhayay P, Banks RE, Barbi S, Barbour AP, Barenboim J, Barnholtz-Sloan J, Barr H, Barrera E, Bartlett J, Bartolome J, Bassi C, Bathe OF, Baumhoer D, Bavi P, Baylin SB, Bazant W, Beardsmore D, Beck TA, Behjati S, Behren A, Niu B, Bell C, Beltran S, Benz C, Berchuck A, Bergmann AK, Bergstrom EN, Berman BP, Berney DM, Bernhart SH, Beroukhim R, Berrios M, Bersani S, Bertl J, Betancourt M, Bhandari V, Bhosle SG, Biankin AV, Bieg M, Bigner D, Binder H, Birney E, Birrer M, Biswas NK, Bjerkehagen B, Bodenheimer T, Boice L,Bonizzato G, De Bono JS, Boot A, Bootwalla MS, Borg A, Borkhardt A, Boroevich KA,Borozan I, Borst C, Bosenberg M, Bosio M, Boultwood J, Bourque G, Boutros PC, Bova GS, Bowen DT, Bowlby R, Bowtell DDL, Boyault S, Boyce R, Boyd J, Brazma A, Brennan P, Brewer DS, Brinkman AB, Bristow RG, Broaddus RR, Brock JE, Brock M, Broeks A, Brooks AN, Brooks D, Brors B, Brunak S, Bruxner TJC, Bruzos AL, Buchanan A, Buchhalter I,Buchholz C, Bullman S, Burke H, Burkhardt B, Burns KH, Busanovich J, Bustamante CD,Butler AP, Butte AJ, Byrne NJ, Børresen-Dale A-L, Caesar-Johnson SJ, Cafferkey A,Cahill D, Calabrese C, Caldas C, Calvo F, Camacho N, Campbell PJ, Campo E, Cantù C,Cao S, Carey TE, Carlevaro-Fita J, Carlsen R, Cataldo I, Cazzola M, Cebon J, Cerfolio R, Chadwick DE, Chakravarty D, Chalmers D, Chan CWY, Chan K, Chan-Seng-Yue M, Chandan VS, Chang DK, Chanock SJ, Chantrill LA, Chateigner A, Chatterjee N, Chayama K, Chen H-W, Chen J, Chen K, Chen Y, Chen Z, Cherniack AD, Chien J, Chiew Y-E, Chin S-F, Cho J, Cho S, Choi JK, Choi W, Chomienne C, Chong Z, Choo SP, Chou A, Christ AN, Christie EL, Chuah E, Cibulskis C, Cibulskis K, Cingarlini S, Clapham P, Claviez A, Cleary S, Cloonan N, Cmero M, Collins CC, Connor AA, Cooke SL, Cooper CS, Cope L, Corbo V,Cordes MG, Cordner SM, Cortés-Ciriano I, Covington K, Cowin PA, Craft B, Craft D,Creighton CJ, Cun Y, Curley E, Cutcutache I, Czajka K, Czerniak B, Dagg RA, Danilova L, Davi MV, Davidson NR, Davies H, Davis IJ, Davis-Dusenbery BN, Dawson KJ, De La Vega FM, De Paoli-Iseppi R, Defreitas T, Tos APD, Delaneau O, Demchok JA, Group PMSW,Consortium P (2020) The repertoire of mutational signatures in human cancer. Nature 578:94–101 3. Bae T, Tomasini L, Mariani J, Zhou B, Roychowdhury T, Franjic D, Pletikos M, Pattni R, Chen B-J, Venturini E, Riley-Gillis B, Sestan N, Urban AE, Abyzov A, Vaccarino FM (2018) Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis. Science 359:550–555 4. Bae JH, Liu R, Roberts E, Nguyen E, Tabrizi S, Rhoades J, Blewett T, Xiong K, Gydush G, Shea D, An Z, Patel S, Cheng J, Sridhar S, Liu MH, Lassen E, Skytte A-B, Grońska-Pęski M, Shoag JE, Evrony GD, Parsons HA, Mayer EL, Makrigiorgos GM, Golub TR, Adalsteinsson VA (2023) Single duplex DNA sequencing with CODEC detects mutations with high sensitivity. Nat Genet 55:871–879 5. Behjati S, Huch M, van Boxtel R, Karthaus W, Wedge DC, Tamuri AU, Martincorena I, Petljak M, Alexandrov LB, Gundem G, Tarpey PS, Roerink S, Blokker J, Maddison M, Mudie L, Robinson B, Nik-Zainal S, Campbell P, Goldman N, van de Wetering M, Cuppen E, Clevers H, Stratton MR (2014) Genome sequencing of normal cells reveals developmental lineages and mutational processes. Nature 513:422–425
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