High quality NMR structures: a new force field with implicit water and membrane solvation for Xplor-NIH-Reference-Cited by-同舟云学术

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High quality NMR structures: a new force field with implicit water and membrane solvation for Xplor-NIH

Published:2016-12-29 Issue:1 Volume:67 Page:35-49
ISSN:0925-2738
Container-title:Journal of Biomolecular NMR
language:en
Short-container-title:J Biomol NMR

Author:

Tian Ye,Schwieters Charles D.,Opella Stanley J.,Marassi Francesca M.

Funder

National Institutes of Health

National Institutes of Health, Intramural Research Program of the Center for Information Technology

Publisher

Springer Science and Business Media LLC

Subject

Spectroscopy,Biochemistry

Link

http://link.springer.com/content/pdf/10.1007/s10858-016-0082-5.pdf

Reference80 articles.

1. Abagyan RA, Totrov MM (1997) Contact area difference (CAD): a robust measure to evaluate accuracy of protein models. J Mol Biol 268:678–685. doi: 10.1006/jmbi.1997.0994

2. Baker NA (2005) Improving implicit solvent simulations: a Poisson-centric view. Curr Opin Struct Biol 15:137–143. doi: 10.1016/j.sbi.2005.02.001

3. Bashford D, Case DA (2000) Generalized born models of macromolecular solvation effects. Annu Rev Phys Chem 51:129–152. doi: 10.1146/annurev.physchem.51.1.129

4. Bermejo GA, Clore GM, Schwieters CD (2012) Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures. Protein Sci 21:1824–1836. doi: 10.1002/pro.2163

5. Bermejo GA, Clore GM, Schwieters CD (2016) Improving NMR Structures of RNA. Structure 24:806–815. doi: 10.1016/j.str.2016.03.007

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