Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings-Reference-Cited by-同舟云学术

Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings

Published:2014-11-18 Issue:4 Volume:60 Page:241-264
ISSN:0925-2738
Container-title:Journal of Biomolecular NMR
language:en
Short-container-title:J Biomol NMR

Author:

Simin Mikhail,Irausquin Stephanie,Cole Casey A.,Valafar Homayoun

Publisher

Springer Science and Business Media LLC

Subject

Spectroscopy,Biochemistry

Link

http://link.springer.com/content/pdf/10.1007/s10858-014-9871-x.pdf

Reference76 articles.

1. Adeyeye J, Azurmendi HF, Stroop CJM, Sozhamannan S, Williams AL, Adetumbi AM, Johnson JA, Bush CA (2003) Conformation of the hexasaccharide repeating subunit from the Vibrio cholerae O139 capsular polysaccharide. Biochemistry 42:3979–3988

2. Al-Hashimi HM, Bolon PJ, Prestegard JH (2000a) Molecular symmetry as an aid to geometry determination in ligand protein complexes. J Magn Reson 142:153–158

3. Al-Hashimi HM, Valafar H, Terrell M, Zartler ER, Eidsness MK, Prestegard JH (2000b) Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings. J Magn Reson 143:402–406

4. Al-Hashimi HM, Gorin A, Majumdar A, Gosser Y, Patel DJ (2002a) Towards structural Genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings. J Mol Biol 318:637–649

5. Al-Hashimi HM, Gosser Y, Gorin A, Hu W, Majumdar A, Patel DJ (2002b) Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings. J Mol Biol 315:95–102

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Concurrent Identification and Characterization of Protein Structure and Continuous Internal Dynamics with REDCRAFT;Frontiers in Molecular Biosciences;2022-02-04

2. REDCRAFT: A computational platform using residual dipolar coupling NMR data for determining structures of perdeuterated proteins in solution;PLOS Computational Biology;2021-02-01

3. Increased usability, algorithmic improvements and incorporation of data mining for structure calculation of proteins with REDCRAFT software package;BMC Bioinformatics;2020-12

4. REDCRAFT: A Computational Platform Using Residual Dipolar Coupling NMR Data for Determining Structures of Perdeuterated Proteins Without NOEs;2020-06-17

5. PDBMine: A Reformulation of the Protein Data Bank to Facilitate Structural Data Mining;2019 International Conference on Computational Science and Computational Intelligence (CSCI);2019-12