“Word” Preference in the Genomic Text and Genome Evolution: Different Modes of n-tuplet Usage in Coding and Noncoding Sequences-Reference-Cited by-同舟云学术

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“Word” Preference in the Genomic Text and Genome Evolution: Different Modes of n-tuplet Usage in Coding and Noncoding Sequences

Published:2005-07 Issue:1 Volume:61 Page:23-35
ISSN:0022-2844
Container-title:Journal of Molecular Evolution
language:en
Short-container-title:J Mol Evol

Author:

Nikolaou Christoforos,Almirantis Yannis

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Molecular Biology,Ecology, Evolution, Behavior and Systematics

Link

http://link.springer.com/content/pdf/10.1007/s00239-004-0209-2.pdf

Reference56 articles.

1. Almirantis Y, (1999) A standard deviation based quantification differentiates coding from noncoding DNA sequences and gives insight to their evolutionary history. J Theor Biol 196:297–308

2. Almirantis Y, Nicolaou C (2005) Multi-criterial coding sequence prediction. Combination of GeneMark with two novel, coding-character specific quantities. Comput Biol Med 35:627–643

3. Almirantis Y, Provata A (1997) The “clustered structure” of the purines/pyrimidines distribution in DMA distinguishes systematically between coding and noncoding sequences. Bull Math Biol 59:975–992

4. Almirantis Y, Provata A (1999) Long- and short-range correlations in genome organisation. J Stat Phys 97:233–239

5. Almirantis Y, Provata A (2001) An evolutionary model about the origin of non-randomness, long-range order and fractality in the genome. Bioessays 23:647–656

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1. Diminishing return for increased Mappability with longer sequencing reads: implications of the k-mer distributions in the human genome;BMC Bioinformatics;2014-01-03

2. The breakdown of the word symmetry in the human genome;Journal of Theoretical Biology;2013-10

3. Information theory applications for biological sequence analysis;Briefings in Bioinformatics;2013-09-20

4. Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws;Molecular Biology and Evolution;2007-08-29

5. The Evolution of Word Composition in Metazoan Promoter Sequence;PLoS Computational Biology;2006

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