FetNet: a recurrent convolutional network for occlusion identification in fetoscopic videos

Author:

Bano Sophia,Vasconcelos Francisco,Vander Poorten Emmanuel,Vercauteren Tom,Ourselin Sebastien,Deprest Jan,Stoyanov Danail

Abstract

Abstract Purpose Fetoscopic laser photocoagulation is a minimally invasive surgery for the treatment of twin-to-twin transfusion syndrome (TTTS). By using a lens/fibre-optic scope, inserted into the amniotic cavity, the abnormal placental vascular anastomoses are identified and ablated to regulate blood flow to both fetuses. Limited field-of-view, occlusions due to fetus presence and low visibility make it difficult to identify all vascular anastomoses. Automatic computer-assisted techniques may provide better understanding of the anatomical structure during surgery for risk-free laser photocoagulation and may facilitate in improving mosaics from fetoscopic videos. Methods We propose FetNet, a combined convolutional neural network (CNN) and long short-term memory (LSTM) recurrent neural network architecture for the spatio-temporal identification of fetoscopic events. We adapt an existing CNN architecture for spatial feature extraction and integrated it with the LSTM network for end-to-end spatio-temporal inference. We introduce differential learning rates during the model training to effectively utilising the pre-trained CNN weights. This may support computer-assisted interventions (CAI) during fetoscopic laser photocoagulation. Results We perform quantitative evaluation of our method using 7 in vivo fetoscopic videos captured from different human TTTS cases. The total duration of these videos was 5551 s (138,780 frames). To test the robustness of the proposed approach, we perform 7-fold cross-validation where each video is treated as a hold-out or test set and training is performed using the remaining videos. Conclusion FetNet achieved superior performance compared to the existing CNN-based methods and provided improved inference because of the spatio-temporal information modelling. Online testing of FetNet, using a Tesla V100-DGXS-32GB GPU, achieved a frame rate of 114 fps. These results show that our method could potentially provide a real-time solution for CAI and automating occlusion and photocoagulation identification during fetoscopic procedures.

Funder

Wellcome/EPSRC

Engineering and Physical Sciences Research Council

H2020 Future and Emerging Technologies

Royal Academy of Engineering Chair in Emerging Technologies

Medtronic/Royal Academy of Engineering Research Chair

Publisher

Springer Science and Business Media LLC

Subject

Health Informatics,Radiology Nuclear Medicine and imaging,General Medicine,Surgery,Computer Graphics and Computer-Aided Design,Computer Science Applications,Computer Vision and Pattern Recognition,Biomedical Engineering

Reference26 articles.

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2. Bano S, Vasconcelos F, Amo MT, Dwyer G, Gruijthuijsen C, Deprest J, Ourselin S, Vander Poorten E, Vercauteren T, Stoyanov D (2019) Deep sequential mosaicking of fetoscopic videos. In: International conference on medical image computing and computer-assisted intervention. Springer, New York, pp 311–319

3. Baschat A, Chmait RH, Deprest J, Gratacós E, Hecher K, Kontopoulos E, Quintero R, Skupski DW, Valsky DV, Ville Y (2011) Twin-to-twin transfusion syndrome (TTTS). J Perinat Med 39(2):107–112

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