An Almost Quadratic Time Algorithm for Sparse Spliced Alignment-Reference-Cited by-同舟云学术

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An Almost Quadratic Time Algorithm for Sparse Spliced Alignment

Published:2009-09-26 Issue:1 Volume:48 Page:189-210
ISSN:1432-4350
Container-title:Theory of Computing Systems
language:en
Short-container-title:Theory Comput Syst

Author:

Sakai Yoshifumi

Publisher

Springer Science and Business Media LLC

Subject

Computational Theory and Mathematics,Theoretical Computer Science

Link

http://link.springer.com/content/pdf/10.1007/s00224-009-9239-x.pdf

Reference12 articles.

1. Alves, C.E.R., Cáceres, E.N., Song, S.W.: An all-substrings common subsequence algorithm. Electr. Notes Discrete Math. 19, 133–139 (2005)

2. Gelfand, M.S., Mironov, A.A., Pevzner, P.A.: Gene recognition via spliced sequence alignment. Proc. Nat. Acad. Sci. 93, 9061–9066 (1996)

3. Gusfield, G.: Algorithms on Strings, Trees, and Sequences. Cambridge University Press, Cambridge (1997)

4. Gabow, H.N., Tarjan, R.E.: A linear time algorithm for a special case of disjoint set union. J. Comp. Syst. Sci. 30, 209–221 (1985)

5. Kent, C., Landau, G.M., Ziv-Ukelson, M.: On the complexity of sparse exon assembly. J. Comput. Biol. 13, 1013–1027 (2006)

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