Multiscale simulations of DNA from electrons to nucleosomes: 22 years of the Ascona B-DNA Consortium

Author:

Dans Pablo

Publisher

Springer Science and Business Media LLC

Reference12 articles.

1. Beveridge DL, Barreiro G, Byun KS, Case DA, Cheatham TE III, Dixit SB, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Seibert E, Sklenar H, Stoll G, Thayer KM, Varnai P, Young MA (2004) Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps. Biophys J 87(6):3799–3813. https://doi.org/10.1529/biophysj.104.045252

2. Beveridge DL, Cheatham TE III, Mezei M (2012) The ABCs of molecular dynamics simulations on B-DNA, circa 2012. J Biosci 37(3):379–397. https://doi.org/10.1007/s12038-012-9222-6

3. Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995) A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 117(19):5179–5197. https://doi.org/10.1021/ja00124a002

4. da Rosa G, Grille L, Calzada V, Ahmad K, Arcon JP, Battistini F, Bayarri G, Bishop T, Carloni P, Cheatham TE III, Collepardo-Guevara R, Czub J, Espinosa JR, Galindo-Murillo R, Harris SA, Hospital A, Laughton C, Maddocks JH, Noy A, Orozco M, Pasi M, Pérez A, Petkevičiūtė-Gerlach D, Sharma R, Sun R, Dans PD (2021) Sequence-dependent structural properties of B-DNA: what have we learned in 40 years? Biophys Rev 13:995–1005. https://doi.org/10.1007/s12551-021-00893-8

5. Dans PD, Balaceanu A, Pasi M, Patelli AS, Petkevičiūtė D, Walther J, Hospital A, Bayarri G, Lavery R, Maddocks JH, Orozco M (2019) The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules. Nucleic Acids Res 47(21):11090–11102. https://doi.org/10.1093/nar/gkz905

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