Exploring the transcription start sites and other genomic features facilitates the accurate identification and annotation of small RNAs across multiple stress conditions in Mycobacterium tuberculosis-Reference-Cited by-同舟云学术

Exploring the transcription start sites and other genomic features facilitates the accurate identification and annotation of small RNAs across multiple stress conditions in Mycobacterium tuberculosis

Published:2024-09-12 Issue:5 Volume:24 Page:
ISSN:1438-793X
Container-title:Functional & Integrative Genomics
language:en
Short-container-title:Funct Integr Genomics

Author:

Cheah Hong-Leong,Citartan Marimuthu,Lee Li-Pin,Ahmed Siti Aminah,Salleh Mohd Zaki,Teh Lay Kek,Tang Thean-Hock

Funder

Fundamental Research Grant Scheme

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1007/s10142-024-01437-5.pdf

Reference111 articles.

1. Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks, Nat. Biotechnol. 37:420–423. https://doi.org/10.1038/s41587-019-0036-z

2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

3. Andrews S (2010) FastQC: A Quality Control Tool for High Throughput Sequence Data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

4. Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, Croucher NJ, Rose G, Perkins TT, Parkhill J, Dougan G, Young DB (2011) Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. PLoS Pathog 7:e1002342. https://doi.org/10.1371/journal.ppat.1002342

5. Bagchi G, Chauhan S, Sharma D, Tyagi JS (2005) Transcription and autoregulation of the Rv3134c-devR-devS operon of mycobacterium tuberculosis. Microbiology 151(12):4045–4053. https://doi.org/10.1099/mic.0.28333-0