Interpreting the lipidome: bioinformatic approaches to embrace the complexity

Author:

Kyle Jennifer E.ORCID,Aimo LucilaORCID,Bridge Alan J.ORCID,Clair GeremyORCID,Fedorova MariaORCID,Helms J. BerndORCID,Molenaar Martijn R.ORCID,Ni Zhixu,Orešič MatejORCID,Slenter DeniseORCID,Willighagen EgonORCID,Webb-Robertson Bobbie-Jo M.ORCID

Funder

Bundesministerium für Bildung und Forschung

Publisher

Springer Science and Business Media LLC

Subject

Clinical Biochemistry,Biochemistry,Endocrinology, Diabetes and Metabolism

Reference61 articles.

1. Aimo, L., Liechti, R., Hyka-Nouspikel, N., Niknejad, A., Gleizes, A., Götz, L., Kuznetsov, D., David, F. P. A., van der Goot, F. G., Riezman, H., Bougueleret, L., Xenarios, I., & Bridge, A. (2015). The SwissLipids knowledgebase for lipid biology. Bioinformatics, 31, 2860–2866. https://doi.org/10.1093/bioinformatics/btv285.

2. Alves, M. A., Lamichhane, S., Dickens, A., McGlinchey, A., Ribeiro, H. C., Sen, P., Wei, F., Hyötyläinen, T., & Orešič, M. (2021). Systems biology approaches to study lipidomes in health and disease. Biochimica et Biophysica Acta Molecular and Cell Biology of Lipids, 1866, 158857. https://doi.org/10.1016/j.bbalip.2020.158857.

3. Bowden, J. A., Ulmer, C. Z., Jones, C. M., Koelmel, J. P., & Yost, R. A. (2018). NIST lipidomics workflow questionnaire: An assessment of community-wide methodologies and perspectives. Metabolomics, 14, 53. https://doi.org/10.1007/s11306-018-1340-1.

4. Brunk, E., Sahoo, S., Zielinski, D. C., Altunkaya, A., Dräger, A., Mih, N., Gatto, F., Nilsson, A., Gonzalez, G. A. P., Aurich, M. K., Prlić, A., Sastry, A., Danielsdottir, A. D., Heinken, A., Noronha, A., Rose, P. W., Burley, S. K., Fleming, R. M. T., Nielsen, J., Thiele, I., et al. (2018). Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature Biotechnology, 36, 272–281. https://doi.org/10.1038/nbt.4072.

5. Clair, G., Reehl, S., Stratton, K. G., Monroe, M. E., Tfaily, M. M., Ansong, C., & Kyle, J. E. (2019). Lipid Mini-On: Mining and ontology tool for enrichment analysis of lipidomic data. Bioinformatics, 35, 4507–4508. https://doi.org/10.1093/bioinformatics/btz250.

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